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Serdes v2: Several fixes that came out of the git <-> prod workflow (#25310)
Braden Shepherdson authored 
- Limit the scanning of directories and files to those named after
  models; don't try to ingest `.git`, `README.md`, etc.
- `table_id` and `collection_id` are optional on Cards
- Deserialization was not resolving some deeply nested `:field`s inside MBQL
  queries.
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