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cacerts_with_RDS_root_ca.jks

This is a JKS trust store, which was created by adding the RDS root CA (latest as of March 2021) to the built-in cacerts file included with OpenJDK 11. It was added by following similar instructions as those outlined for creating a new trust store file documented here. The keystore password is: metabase

rds-combined-ca-bundle.pem

This is simply a copy of the "combined" CA bundle from AWS.

rds_root_ca_truststore.jks

This is a keystore that contains only the RDS root CA. If you try to use it as the JVM-level truststore, you will probably get a lot of SSL related errors, but it should work in isolation for particular connections (ex: Oracle SSL connectivity).